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Metagenomics Versus Metatranscriptomics of the Murine Gut Microbiome for Assessing Microbial Metabolism During Inflammation

Abstract : Shotgun Metagenomics Versus Metatranscriptomics profile bacterial population composition and taxa relative abundance, but did not inform about differential gene content associated with inflammation. Metatranscriptomics was more robust for capturing bacterial metabolism in real time. Although both approaches are complementary, it is often not possible to apply them in parallel. We hope our data will help researchers to decide which approach is more appropriate for the study of different aspects of the microbiome.
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https://hal-univ-pau.archives-ouvertes.fr/hal-03571948
Contributor : Béatrice Lauga Connect in order to contact the contributor
Submitted on : Monday, February 14, 2022 - 9:33:09 AM
Last modification on : Wednesday, May 4, 2022 - 3:34:02 PM
Long-term archiving on: : Sunday, May 15, 2022 - 6:17:49 PM

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Juan Jovel, Aissata Nimaga, Tracy Jordan, Sandra O’keefe, Jordan Patterson, et al.. Metagenomics Versus Metatranscriptomics of the Murine Gut Microbiome for Assessing Microbial Metabolism During Inflammation. Frontiers in Microbiology, Frontiers Media, 2022, 13, ⟨10.3389/fmicb.2022.829378⟩. ⟨hal-03571948⟩

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